The work is supported by the Russian Foundation for Basic Research, grant 10-07-00685-a

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PDB code: 1mnm

ClassificationTRANSCRIPTION/DNA
TitleYEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
In PDB since1997-11-03
Complex of protein withdna
Experimental methodX-RAY DIFFRACTION
Resolution, Ån/a

Composition of PDB entry and biounits

BiounitProtein chainsDNA chainsRNA chainsNo. of models
PDBABCDEF0
pdb1ABCDEF0

No comments on biounits.

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CluD
Hydrophobic clusters in the entire structure
 
Contact
Hydrophobic clusters at the interface between protein and nucleic acid
 
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HBonds
Potential hydrogen bonds between protein and nucleic acid
 
Bridges
Potential water bridges between protein and nucleic acid
 
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Pfam domains

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DomainChainResiduesNuc. chains
Homeobox (Homeobox domain)  external C132-189
Homeobox (Homeobox domain)  external D132-189
SRF-TF (SRF-type transcription factor (DNA-binding and dimerisation domain))  external A24-74
SRF-TF (SRF-type transcription factor (DNA-binding and dimerisation domain))  external B24-74


SCOP domains

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ClassFoldSuperfamily FamilyDomainSpecies Residues Nuc. chains
All alpha proteins external DNA/RNA-binding 3-helical bundle external Homeodomain-like external Homeodomain external mat alpha2 Homeodomain external Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] external C:
All alpha proteins external DNA/RNA-binding 3-helical bundle external Homeodomain-like external Homeodomain external mat alpha2 Homeodomain external Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] external D:
Alpha and beta proteins (a+b) external SRF-like external SRF-like external SRF-like external MCM1 transcriptional regulator external Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] external A:
Alpha and beta proteins (a+b) external SRF-like external SRF-like external SRF-like external MCM1 transcriptional regulator external Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] external B:

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