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Structures and Sequences

The page of the interdisciplinary seminar/working group based on the Department of Mathematical Methods in Biology of A.N. Belozersky Institute, Moscow State University.

Our projects

Data Base

• NPIDB — a database of structures of DNA-protein and RNA-protein complexes (new version, under construction)
• NPIDB — a database of structures of DNA-protein and RNA-protein complexes (old version)

Tools

• CluD — a program for finding hydrophobic clusters in 3D structures of macromolecules
• ConClus — search of conserved hydrophobic clusters in aligned 3D structures of protein families
• SVETKA — a program for analysis of multiple alignments
• wLake — a program for detecting structural water molecules
• MALAKITE — a program for automatic detection of aligned blocks in ma ultiple protein alignment.
• BLOCKS 3D — a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains.
• SheeP — Automatic description of beta- and alpha/beta-structural proteins
• Geometrical core for a family of protein 3D structures
• Mini tools

Protein families

Other projects

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